PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503713.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 617aa    MW: 69855.9 Da    PI: 5.729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-15425471455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h + ErrRR+++N++f +Lr+++P++      K +K++iL  A+eY+++L+
  XP_004503713.1 425 NHVMSERRRRAKLNERFLTLRSMVPSN-----SKDDKVSILDDAIEYLRKLE 471
                     799***********************8.....7****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-547189IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.022421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-14424475No hitNo description
SuperFamilySSF474595.76E-18424484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-18425483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-13425471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-15427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2600.001546613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MVSENMKEQL ALAVRSIQWS YAIFWSESVN QSGVLNWGEG YYNGDIKTRK TSQGVELSSD  60
QIGLQRNEQL RELFRSLKTT ETSPQTKRPS AALSPEDLTD TEWYYLVCMS FVFKIGQGLP  120
GRALANGQPI WLINAYSTDC KVFSRALLAK SASIQTVVCF PFMKGVIELG TTDLVLEDLS  180
LIQQIKTSFL NILNVDDPSN TETIPNTRNN EGVACEAFDH NDFNVELIPE VEYDIINNTT  240
TSPNGSSNAL DINQLLDETF MVESINHRTS QVQSWQVIDD DLSNCVHNNS MNSSDCISQT  300
FASPQKINAS ADPKGGEDCN NQKMTLVDPL TDDWHYQGIL STLLKSADQL IMGVHFQNFH  360
QESSFCVWNK GGTVDCHRPR QGTSQKLLKK ILFEVPRMHM DGLLESQEEN DYREGTRLEA  420
DEGMNHVMSE RRRRAKLNER FLTLRSMVPS NSKDDKVSIL DDAIEYLRKL EKRIKELEAQ  480
RDPIDIESRS KKSTHDMVER TSDQYYNKTN NIKKPIVKKR KVCDIEETRR EVCLKGSSTS  540
VNMSDNRVVI EMKCPSRPGR ILEIMEVVNK LNIDFDSVQS TEADGSIHLI IKSKFTGPSN  600
ATTKKIKQAL QKVVSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-161918924192Transcription factor MYC3
4rqw_B2e-161918924192Transcription factor MYC3
4rs9_A2e-161918924192Transcription factor MYC3
4yz6_A2e-161918924192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503713.10.0PREDICTED: transcription factor EGL1
TrEMBLA0A072U5D10.0A0A072U5D1_MEDTR; BHLH transcription factor
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-169bHLH family protein